Download PDF by Sèverine Bérard, Anne Bergeron, Cedric Chauve (auth.), Jens: Comparative Genomics: RECOMB 2004 International Workshop,

By Sèverine Bérard, Anne Bergeron, Cedric Chauve (auth.), Jens Lagergren (eds.)

ISBN-10: 3540244557

ISBN-13: 9783540244554

This publication constitutes the completely refereed post-proceedings of the RECOMB 2004 satellite tv for pc Workshop on Comparative Genomics, RCG 2004, held in Bertinoro, Italy in October 2004.

The 10 revised complete papers provided have been rigorously reviewed and more suitable for inclusion within the ebook. The papers tackle a extensive number of features of comparative genomics starting from new quantitative discoveries approximately genome buildings and strategies to theorems at the complexity of computational difficulties encouraged through genome comparison.

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Extra info for Comparative Genomics: RECOMB 2004 International Workshop, RCG 2004, Bertinoro, Italy, October 16-19, 2004, Revised Selected Papers

Sample text

For v ∈ V let Λv denote the label of v. V is divided into four disjoint sets V , V , V and V such that5 (D1) if v ∈ V then v is a leaf in T labelled by a species a (v is called a gene node), (D2) if v ∈ V then v is a leaf in T (v is called a loss node), (D3) if v ∈ V then v has two children a and b such that Λa = Λb = Λv (v is called a duplication node), (D4) if v ∈ V then v has two children a and b such that Λa ∪ Λb = Λv and Λa ∩ Λb = ∅ (v is called a speciation node), (D5) for all v, w ∈ V such that Λv ∩ Λw ∅ we have either Λv ⊆ Λw or Λv ⊇ Λw .

Science 301 (2003) 71–6 2. : PlasmoDB: the Plasmodium genome resource. Nucleic Acids Research 31 (2003) 212–5 3. : Comparative analyses of multi-species sequences from targeted genomic regions. Nature 424 (2003) 788–93 4. : PipMaker – a web server for aligning two genomic DNA sequences. Genome Research 10 (2000) 577–86 5. : Efficient multiple genome alignment. Bioinformatics 18 (2002) S312–20 6. : AVID: a global alignment program. Genome Research 13 (2003) 97–102 Toward a Phylogenetically Aware Algorithm for Fast DNA Similarity Search 29 7.

Bioinformatics 18 (2002) S312–20 6. : AVID: a global alignment program. Genome Research 13 (2003) 97–102 Toward a Phylogenetically Aware Algorithm for Fast DNA Similarity Search 29 7. : LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA. Genome Research 13 (2003) 721–31 8. : Computational identification of evolutionarily conserved exons. In: Proceedings of the Eighth Annual International Conference on Computational Molecular Biology (RECOMB04), San Diego, CA (2004) 177–86 9.

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Comparative Genomics: RECOMB 2004 International Workshop, RCG 2004, Bertinoro, Italy, October 16-19, 2004, Revised Selected Papers by Sèverine Bérard, Anne Bergeron, Cedric Chauve (auth.), Jens Lagergren (eds.)


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